Article Text

Download PDFPDF

Child Health CheckPoint: cohort summary and methodology of a physical health and biospecimen module for the Longitudinal Study of Australian Children
  1. Susan A Clifford1,2,
  2. Sarah Davies1,
  3. Melissa Wake1,2,3
  4. on behalf of the Child Health CheckPoint Team
    1. 1 Murdoch Children’s Research Institute, Parkville, Victoria, Australia
    2. 2 Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia
    3. 3 Department of Paediatrics and The Liggins Institute, The University of Auckland, Auckland, New Zealand
    1. Correspondence to Professor Melissa Wake; melissa.wake{at}


    Objectives ‘Growing Up in Australia: The Longitudinal Study of Australian Children’ (LSAC) is Australia's only nationally representative children’s longitudinal study, focusing on social, economic, physical and cultural impacts on health, learning, social and cognitive development. LSAC's first decade collected wide-ranging repeated psychosocial and administrative data; here, we describe the Child Health CheckPoint, LSAC’s dedicated biophysical module.

    Design, setting and participants LSAC recruited a cross-sequential sample of 5107 infants aged 0–1 year and a sample of 4983 children aged 4–5 years in 2004, since completing seven biennial visits. CheckPoint was a cross-sectional wave that travelled Australia in 2015–2016 to reach LSAC’s younger cohort at ages 11–12 years between LSAC waves 6 and 7. Parent–child pairs participated in comprehensive assessments at 15 Assessment Centres nationwide or, if unable to attend, a shorter home visit.

    Measures CheckPoint’s intergenerational, multidimensional measures were prioritised to show meaningful variation within normal ranges and capture non-communicable disease (NCD) phenotype precursors. These included anthropometry, physical activity, fitness, time use, vision, hearing, and cardiovascular, respiratory and bone health. Biospecimens included blood, saliva, buccal swabs (also from second parent), urine, hair and toenails. The epidemiology and parent–child concordance of many measures are described in separate papers.

    Results 1874 (54% of eligible) parent–child pairs and 1051 second parents participated. Participants' geographical distribution mirrored the broader Australian population; however, mean socioeconomic position and parental education were higher and fewer reported non-English-speaking or Indigenous backgrounds. Application of survey weights partially mitigates that the achieved sample is less population representative than previous waves of LSAC due to non-random attrition. Completeness was uniformly high for phenotypic data (>92% of eligible), biospecimens (74%–97%) and consent (genetic analyses 98%, accessing neonatal blood spots 97%, sharing 96%).

    Conclusions CheckPoint enriches LSAC to study how NCDs develop at the molecular and phenotypic levels before overt disease emerges, and clarify the underlying dimensionality of health in childhood and mid-adulthood.

    • cohort profile
    • non-communicable disease
    • biological specimen bank
    • phenotype
    • reference values
    • parents
    • children
    • epidemiologic studies
    • cross-sectional studies
    • longitudinal studies

    This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See:

    Statistics from

    Request Permissions

    If you wish to reuse any or all of this article please use the link below which will take you to the Copyright Clearance Center’s RightsLink service. You will be able to get a quick price and instant permission to reuse the content in many different ways.

    Strengths and limitations of this study

    • The Child Health CheckPoint aimed to enrich the ongoing Longitudinal Study of Australian Children (LSAC) with sophisticated health assessments and biological samples.

    • Strengths include LSAC’s existing rich decade-long exposure and administrative data for the child and both parents, and CheckPoint’s collection of cross-generational parent–child assessments paired on time/date of assessment, protocols and equipment; timing of the module to capture early adolescence; and timely public release of data to researchers.

    • Families living in regional areas or with lower socioeconomic positions are under-represented; however, sample weights are available that enable analyses that are more reflective of the original design sample of Australian children and their families.

    • For each child participant, only one parent (predominantly the mother) undertook the detailed paired assessments, but the second parent contributed a buccal (DNA) sample, where possible.

    • Access policies are in place for future extraction of extensive additional data from the digital and biospecimen repositories held at the Murdoch Children’s Research Institute.


    Worldwide there is a large and growing burden of non-communicable diseases (NCD). Many have their genesis in early life, and develop over decades of cumulative exposures. This provides opportunities to prevent, slow or alter disease trajectories at multiple points of the life course. Wide gradients within the normal range of phenotypes relevant to many later NCDs are already measurable across many body systems from childhood.

    It is evident that family, social and other environmental factors interact with an individual’s innate biology (including genetic profile) to create modifiable pathways (such as chronic inflammation) common to multiple NCDs.1 Shonkoff’s biodevelopmental framework of lifecourse determinants of health and their mechanisms proposes that health-promoting and health-threating environmental effects interact with genes and affect later health, via physiological adaptions during sensitive periods and cumulative effects over time.1 These physiological adaptions are the key intermediary step, which may be measured years or decades before overt ill health develops.

    ’Big picture' research into physiological adaptions and objective health outcomes has shifted from narrowly focused hypothesis-driven studies with a single outcome, towards multidisciplinary and/or multidimensional research with outcomes across multiple domains that recognise the interconnectedness of health.2 3 Around the start of the millennium, many countries launched large-scale birth cohort studies (eg, UK Millennium Cohort,4 Growing Up in Ireland,5 New Zealand,6 Singapore7). Australia’s study, Growing Up in Australia: The Longitudinal Study of Australian Children (LSAC) was intended to provide a strong evidence base for policy development and service delivery on a wide range of issues relating to children’s development and lifetime well-being.8

    LSAC is a population-based cohort study from early childhood, and is the country’s only nationally representative children’s longitudinal study. It is broad in scope, surveying lifetime pathways in health, learning and development. Its design incorporates frequent (biennial) and ongoing data collection; multiple study respondents; linkage to lifetime universal parent and child administrative data including healthcare (eg, lifetime primary health services, medication prescriptions dispensed), education (eg, national literacy and numeracy exam results) and census data sets; and open access to the data sets for researchers. The federal government investment into LSAC is yielding major returns that influence policy,9 with several hundred publications in the first decade of the study (listed at Adopting a dual cross-sequential design, LSAC recruited two cohorts in 2004, each comprising ~5000 children. At recruitment, the K cohort children were aged 4–5 years (n=4984 families, 50.4% uptake), and B cohort  were  aged  0 – 1  year   (n = 5107  families ,  57.2 %  uptake; figure 1). A two-stage random sampling design was applied, first randomly selecting 10% of postcodes (stratified by state and urban/rural locations), then in-age children within those postcodes from the Medicare database.10 Medicare is an Australian government programme within the universal healthcare system that reduces or covers medical visit and medication costs, into which 98% of children are enrolled by their first birthday.10 Very remote postcodes and those with <20 children (n=874 postcodes, 3.2% of population) were excluded. At wave 6 (child age 10–11 years), 74% of the original B cohort were retained; families with Indigenous or non-English-speaking backgrounds, or incomes less than $1000 per week were under-represented in later waves.11

    Figure 1

    Participant flow chart. LSAC, Longitudinal Study of Australian Children; n, number of families.

    Like other government-implemented children’s studies internationally, LSAC has mainly focused on psychosocial and demographic exposures, with all health items except anthropometry and blood pressure being parent-reported or self-reported. A physical health and biospecimen module was beyond the scope of the original study design. There was also uncertainty as to how such a biomarker module might impact (whether positively or negatively) on cohort retention and engagement.

    To address this gap, we recently introduced an intergenerational physical health and biomarkers module, the Child Health CheckPoint. This one-off cross-sectional wave, nested between LSAC waves 6 and 7, was offered to the B cohort at child age 11–12 years. CheckPoint’s intergenerational, multidimensional measures were prioritised to show meaningful variation within normal ranges and capture NCD phenotype precursors both in adults and children. Wherever possible we captured raw digital data (eg, images, traces) that would support additional extraction and analysis beyond the core phenotypic summary data (eg, blood pressure readings). The broad set of paired measures, collected on parent–child dyads on the same day with identical equipment, was designed to allow researchers to simultaneously examine multiple phenotypes in both ages as well as the intergenerational transmission of health. In this paper, we describe the Child Health CheckPoint methods and sample characteristics. This allows researchers to understand and make best use of the robust data set and biospecimens. Other papers in this BMJ Open Special Issue explore the epidemiology and parent–child concordance of individual measures in greater depth.12–25


    Study design

    LSAC is a longitudinal child cohort study conducted in partnership between the Australian Government Department of Social Services, the Australian Institute of Family Studies and the Australian Bureau of Statistics. It is funded by the Australian Government.

    The Child Health CheckPoint was conducted between February 2015 and March 2016 at child age 11–12 years. The CheckPoint was offered to the B cohort because: (A) it contains more detailed pregnancy and birth data; (B) LSAC’s data collections span the children’s entire postnatal lives; (C) by this child age, there is a wide range in normal values of risk factors predicting adult preclinical markers of disease; and (D) experience suggested that the health measurements would be of greater interest (and so attract higher uptake) to children and parents at this age than to the K cohort aged 15–16 years, an age when many birth cohorts experience heightened attrition.26–28

    Study development

    In 2007, the Department of Social Services commissioned a scoping report on the potential value, content and cost of a physical health and biomarkers module.29 A partnership was formed between LSAC senior management, LSAC researchers and child health researchers new to LSAC with physical health and biomarkers content expertise. In 2012, researchers at the Murdoch Children’s Research Institute (MCRI) partnered with investigators at the University of South Australia, University of Adelaide and Deakin University to form the CheckPoint Investigator Team and to lead a successful application to the Australian National Health and Medical Research Council (NHMRC Project Grant 1041352, 2013-17). This core funding enabled the child cardiorespiratory measures and leveraged additional institutional, competitive (NHMRC Project Grant 1109355, 2016-2020) and philanthropic funding, such that the CheckPoint ultimately encompassed a much wider range of health domains underpinning NCDs across two generations.

    Feasibility of core CheckPoint assessments were tested in 2014 within the ‘3C’ study; a longitudinal study of 378 aged 7–17 years in the MCRI’s existing Parent Education and Support (PEAS),30 Live, Eat and Play 2 (LEAP2)31 and Shared Care Obesity Trial in Children (HopSCOTCH)32 cohorts examining cardiovascular outcomes of life course growth, diet and activity.33 34

    Late in 2014, we tested the CheckPoint protocol with a vanguard of 52 Victorian LSAC families to fine-tune recruitment, visit flow, timing and feasibility, and test acceptability of the centre-based suite of measures ahead of the much larger bulk of children due to attend in 2015–2016. Child and parent participants prospectively rated enjoyment of each assessment and overall impressions (scored out of 10). Participants were also asked to rate how the CheckPoint module changed their feeling about being in LSAC overall, from 0 (Now I like it much less) to 10 (Now I like it much more).


    LSAC B cohort families who completed a wave 6 home interview were eligible. The study child and one parent were invited to participate in comprehensive health assessments at an Assessment Centre or home visit. Choice of parent and whether or not biological was determined by the family; in practice this ’attending parent' was usually the mother. Second biological parents living with the child, if available, were also invited to participate after the visit by contributing a buccal swab.

    Ethical approval and consent

    The CheckPoint study was approved by The Royal Children’s Hospital Melbourne Human Research Ethics Committee (33225D) and the Australian Institute of Family Studies Ethics Committee (14-26); the latter also provides ethical review and approval for LSAC at every wave. A parent or guardian provided written consent for their own and their child’s participation in the study. Optional consent was requested for the collection, storage and non-genetic analysis of biospecimens; genetic analyses of these samples; sharing images and samples with other researchers; and access to the child’s birth data and dried newborn heel-prick blood samples that are stored indefinitely by most Australian states. Non-attending biological parents provided written consent for the storage and non-genetic analysis of their buccal swab, and optional consent for genetic analysis was requested. Participants were aware that no health, genetic or other information would be returned to them, beyond a summary of physical health measurements (eg, body mass index, blood pressure) provided at the end of the visit.

    Patient and public involvement

    Because LSAC is a population-based longitudinal study, no patient groups were involved in its design or conduct. To our knowledge, the public was not involved in the study design, recruitment or conduct of the LSAC study or its CheckPoint module. Parents received a summary health report for their child and themselves at or soon after the CheckPoint assessment visit. They consented to take part knowing that they would not otherwise receive individual results about themselves or their child.


    Participation in the CheckPoint involved (1) an Assessment Centre or home visit for the child and attending parent, (2) follow-up phone interview for the child, (3) a week of wearing an accelerometer (physical activity monitor) for the child and attending parent, and (4) a buccal (DNA) sample collection at home for the non-attending parent. Assessments and phone interviews were conducted by trained research assistants and students.

    Sample recruitment: B cohort families were briefly introduced to the upcoming Child Health CheckPoint during the LSAC wave 6 home interview in 2014. A total of 3513 families (93% of wave 6 families and 69% of original cohort, see figure 1) gave written consent to be contacted by the CheckPoint Team.

    Assessment visit types and locations: The core CheckPoint data collection mechanism was the ’pop-up' Main Assessment Centre, set up in seven major Australian cities (online supplementary figure 1) sequentially for between 2 and 8 weeks before being packed up and transported by road to the next location. On each operating day, up to 24 families were invited to attend the Assessment Centre for a 3.5-hour visit.

    Supplemental material

    Road transport between Australian cities can take days. To maximise the size and geographic reach of the sample, ’pop-up' Mini Assessment Centres operated in eight regional cities for up to a week while the bulk of equipment was in transit. The 2.75-hour Mini Assessment Centre visit included most of the assessments offered at the Main Assessment Centres, except those requiring large equipment unable to be checked in as personal luggage on commercial flights. Those unable to attend an Assessment Centre were offered a 1.5-hour home visit with a subset of measures that could be conducted in the home by a trained research assistant (ie, not a phlebotomist) using portable equipment. Home visits occurred in Main Assessment and Mini Assessment Centre cities, and other regional towns.

    In total, the study visited over 30 cities and towns over the 1-year data collection period (online supplementary figure 1). The Assessment Centre operated in 15 cities and towns. This number was constrained by the fixed data collection window and budget (ie, substantial time and costs of setting up in each location, regardless of the number of participants seen). The specific locations chosen were the cities and towns with the largest clusters of B cohort participants. Using mapping software, we plotted participants residing within 2 hours’ travel radius of each regional city. If the regional city had the necessary infrastructure for a Mini Assessment Centre and at least 40 eligible families within the radius, we set up a centre; otherwise we offered home visits. Most families (72%) attended a Main Assessment Centre, 8% attended a Mini Assessment Centre and 20% completed a home visit. Table 1 reports the assessments offered at each visit type, and figure 1 the sample size per visit type.

    Table 1

    Summary of measures and biological samples collected in CheckPoint assessments

    Assessment sequence: Participants completed the assessments in a standard sequence (figure 2), designed to minimise interdependencies between measures. Bronchodilator administration (which may alter cardiovascular parameters) followed cardiovascular measures, and the snack station was scheduled after saliva and semifasting blood collection, but before exercise.

    Figure 2

    Assessment sequence, by participant and visit type. Oblong box indicates child and parent attended the station together. Parents attended the Young Bloods stations twice; first for their own blood collection, then to accompany their child. Food Stop included consumption experiment at the Main Assessment Centre (ie, data collected), but was simply offering refreshments at the Mini Assessment Centre (ie, no data collected). The NIH Vocabulary Picture Test was administered in Bone Zone at the Main Assessment Centre, and as part of Sit and Click in Mini Assessment Centre and home visits. In home visits, Sit and Click (child questionnaire) had allocated time between other assessments; for the Assessment Centre visits, Sit and Click did not have an allocated time or physical location (children completed the questionnaire in downtime at other stations). Postvisit activities (ie, accelerometry, child follow-up phone interview and non-attending parent buccal swab) are not included in the diagram and followed the same protocol regardless of visit type.

    The visit started with the parent providing consent, while the child wrote their story at Life at 25. At Assessment Centres, participants were then given a carry bag containing an iPad to complete the questionnaire, water bottle and urine sample collection kit, and a lanyard showing the order of data collection stations to visit. Participants advanced every 15 min from one station to the next (except child Lung Fun which was 30 min duration), following the previous participant in their journey around the Centre. Most stations were conducted one-on-one, but in some the study child and attending parent were both present (CheckPoint Check-in, Measure Up, Tooth Booth, Bone Zone, child Young Bloods and Endgames, see figure 2), and two children could be present at any one time for Life at 25, Jumping Beans and Bike Hike.

    Prior to the last station Endgames, participants could take extra time to complete their questionnaire or provide a urine sample. At Endgames, a staff member explained the contents of a take-home pack. The child and parent were fitted with their wrist-worn accelerometers, and a follow-up phone interview was booked/confirmed for the child to complete additional time-use diaries.35 The take-home pack also included a reply-paid express post satchel, child and parent activity log cards, non-attending parent buccal sample collection kit (as applicable), summary of health results collected on the day, and thank you gifts and token reimbursement for travel.

    Home visit consent, assessments and take-home packs used the same protocol as the Assessment Centres and included at least one measure from every major health domain; however, some assessments were omitted (table 1). The home visit sequence generally mirrored the centre flow, with minor adjustments to allow one staff member to assess both child and parent within the available time. Dried blood spot, urine and buccal swabs were obtained, and urine processing was delayed when local laboratory facilities were not available.36

    Research assistants and students were trained by experts, and real-time quality checks were undertaken throughout the data collection period. These checks included data range checks integrated into the data entry forms; dynamic data completeness checks for each participant during and at the end of their visit, with gaps redressed by a dedicated staff member before departure; weekly completeness checks for the study overall and ongoing process modifications to address all causes of missing data identified; random visual checks of the data to identify and fix any developing departures from protocol; and ongoing staff training, time trials and testing knowledge of standard operating procedures. Inter-rater and intrarater reliability for data transcription and scoring was calculated, where relevant and possible. Data collection reliability was not available as the participant flow precluded repeated measures of same individual.


    Measures and biological samples collected are briefly described in table 1. Other papers of this BMJ Open Special Issue 12–25 provide greater detail, epidemiological description and parent-child concordance for many of these; and their rationale has been previously published.37 Data were collected electronically via specialist medical equipment/software or, where not possible, staff entered data into REDCap (Research Electronic Data Capture) electronic data collection tools.38 REDCap was also used to administer the child and parent questionnaires on iPads. Data collection and data processing standing operating procedures are available (see Measures were offered to both children and parents; however, the parent flow omitted the exercise stations (Bike Hike and Jumping Beans), time-use diary, postbronchodilator spirometry and toenail samples. Instead, parents completed a more detailed questionnaire about their child’s healthcare (including hospitalisations), medications and use of community services; and their own health-related quality of life.

    Biospecimen collection and repository: Biospecimens collected are described in table 1. Samples (except buccal swabs) were processed within hours in an on-site laboratory set up at all Main Assessment and most Mini Assessment Centres. Blood and saliva samples were generally processed within an hour (blood: range 1 min to 3.8 hours, median 53 min; saliva: range 1 min to 5.7 hours, median 44 min). Urine sample processing was delayed if collected away from a laboratory; 56% of urine samples processed within 3 hours (range 1 min to 9 days, median 71 min).36 At the completion of each Assessment Centre, a single batch of all frozen samples was shipped on dry ice to the Melbourne Children’s Bioresource Centre (at the MCRI) for long-term storage at −80°C (except buffy coat aliquots are stored in vapour phase liquid nitrogen). A temperature data logger was included in each shipment to confirm optimal temperature throughout. All other samples, kept at room temperature, were transported at the same time. All samples are stored in a deidentified manner and are only identified for extraction from the repository. Newly derived biospecimen data are linked to the participant by an external staff member using a linkage key. Samples were tracked using QR code scanners and FreezerPro Enterprise (RuRo, Maryland, USA) software. Frozen samples are stored in boxes of 96 aliquots, and aliquot picking is undertaken by hand (ie, not automated by robot). As of April 2019, completed biomarker analyses for all parents and children with relevant samples were serum metabolomics (,22 39 40 urinary albumin-creatinine ratio,19 telomere length16 and genotyping; micronutrient and one-carbon pathway analyses were under way.

    Data access

    The LSAC data are available to researchers under licence, and from early 2019 include the first tranche of completed parent and child CheckPoint data. The LSAC website explains access to these data


    It is intended that all further CheckPoint data and biospecimens will also be accessible to all researchers. Applications to undertake new data extraction and biosamples, or to collaborate with CheckPoint investigators on in-train funded new data, are considered by CheckPoint’s Data/Biospecimens Access Committees (see

    Statistical analyses

    Sample characteristics, sample size and consent rates were described as counts, proportions, means and SDs. Baseline demographic characteristics of LSAC families who did and did not participate in CheckPoint were compared to consider the representativeness of the maintained CheckPoint sample in relation to preceding LSAC waves.

    Survey weights

    CheckPoint survey weights were created41 using methods similar to those used for previous waves of LSAC, and are provided in the CheckPoint data set. These methods account for the selection probability of each child to establish the target design sample, initial non-response to the baseline survey and subsequent loss to follow-up. LSAC and CheckPoint survey weights have been estimated to reflect the likelihood of participation from wave to wave within the limits of the information available from study measures.

    Applying LSAC survey weights produces analyses that will be as representative as possible for all Australian children born in 2004 and their parents. CheckPoint differs in that, for the majority of measures, only the attending parent (usually the mother) was assessed, and thus weighted analyses of the parent data are more difficult to interpret because the weighting does not estimate a representative sample of all parents.


    Below we summarise the vanguard participants' evaluation of the CheckPoint module. We then describe B cohort recruitment and reasons for non-participation in the CheckPoint module, and demographic characteristics of CheckPoint participants and non-responders. Lastly, we summarise data completeness for each measure, and biospecimen collection and consent rates.

    In 2014, ahead of the main data collection wave, the vanguard families reported high levels of enjoying the CheckPoint visit (mean out of 10: children 8.8, parents 8.2), recommending it to others (children 7.7, parents 9.0) and valuing the child health report provided on the day (children 7.7, parents 8.2). Children and parents were also asked if participating in the CheckPoint had changed how they feel about being in the LSAC study (from 1 ’Like it much less' to 10 ’Like it much more'); on average, participants liked LSAC more after their CheckPoint visit (mean: children 8.4, parents 7.7).

    The CheckPoint sample size was fixed by LSAC retention to wave 6. Of a total of 3764 families who participated in wave 6, there were 3513 (93%) consented to CheckPoint contact, 3152 (84%) provided valid contact details and were invited into CheckPoint and 1875 (50%) participated (figure 1). One family withdrew consent after assessment. Thus, the CheckPoint analytic sample included 1874 parent–child pairs, plus 1051 non-attending resident parents.

    Most non-participation (60%) was due to inability to attend or reschedule a visit during the short period CheckPoint was in each location. Far fewer families declined (18%).

    Demographic characteristics of the CheckPoint sample and non-responders are summarised in table 2. Within the CheckPoint sample, 99% of attending parents and all non-attending participants were a biological parent of the study child. There was an equal distribution of boys and girls. However, the sample of attending parents did not equally or randomly comprise mothers and fathers, since each family decided which parent or guardian attended and most (88%) attending parents were mothers. Almost 90% of attending parents were nominated ‘Parent 1’ (ie, the parent who knows the child best and completes the main questionnaire) in previous LSAC waves. The majority of CheckPoint families lived in major cities, with a distribution across the states and territories similar to the Australian population. Larger proportions of families were in the higher socioeconomic position quintiles than in the Australian population. Detailed comparisons of the LSAC sample to the Australian population have been published previously.11 42

    Table 2

    Child Health CheckPoint sample characteristics

    Compared with B cohort families who did not take part in the CheckPoint, table 2 shows that participating families at baseline (2004) reported higher socioeconomic position and parental education, and lower likelihood of non-English-speaking or indigenous backgrounds.

    Data completeness for each measure was high (table 3) at >92% of participants eligible for each measure, except for accelerometry and child pain. A shortage of accelerometers at certain points over the data collection period meant physical activity data were available for 74% of children and 77% of parents. Initial problems with the branching architecture of questions36 meant pain data were available for only 85% of children (but 99% of parents). The most common reasons for missing data were the measure not being included in all visit types, followed by equipment unavailability, participant refusal and erroneous data removed in the preparation of the data set.36 Data from all of the measures listed in table 3 are included in the first CheckPoint data release in early 2019, except the handwritten story; retinal, oral and facial photographs; and telomere length.

    Table 3

    Sample size by measure and participant group

    Biospecimen collection rates were also high (table 4) for blood (venous or finger prick, 91% of children and 96% of attending parents) and other biological samples (>70%). Most (95%) of children and parents had either a saliva (collected when laboratory facilities were available) or buccal swab (stable for 60 days before processing) sample. Consent was obtained for ≥97% of samples to be shared with other researchers and used for genetic analyses, and for ≥94% of participants' digital images to be shared with other researchers and child perinatal birth data and neonatal blood spots be accessed. Buccal samples were also collected from 1051 non-attending parents (of whom 94% consented to share, and 98% to undertake genetic analyses). In total, 1021 (55%) families have at least one sample available for the child and both biological parents.

    Table 4

    Data/sample collection rates and consent for use of images/sample


    Principal findings

    The Child Health CheckPoint provides a paired cross-generational snapshot of the health of Australian children aged 11–12 years and their parents who took part in the CheckPoint assessment (mostly mothers). Data completeness was high among the nearly 2000 families who participated. The utility of the data and biospecimens is further enhanced by near-universal consent for genetic analysis and sharing with other researchers. Enriching LSAC’s lifelong environmental data with CheckPoint’s biological data strengthens the utility of LSAC to address important questions on how NCDs develop phenotypically before overt disease is evident, and shed light on the underlying dimensionality of health at different life stages.

    Key logistic challenges faced by the CheckPoint were its short-time window both to plan and conduct (a fixed 12 months from February 2015), the sheer size of Australia (approximately the same as continental USA) and the limited funding allowing for only one set of heavy equipment and thus curtailing the period during which the CheckPoint was available to participants in each city.

    Strengths and limitations

    Strengths of LSAC include its large population-based sample, data linkage, historical repeated measures and open data access. Strengths of the CheckPoint module include the sophistication of its health assessments, and the cross-generational child–parent assessments paired on time of assessment, protocols and equipment. Utility of the CheckPoint data is strengthened by its timing relative to child age (ie, adolescence onset) and LSAC duration (ie, 10 years of data already available); and its timely release of curated data to researchers (within 3 years of data collection), with more to come as data scoring and biomarker analyses are completed. The CheckPoint is led by diverse and specialty-based researchers, who continue to develop multisystem hypotheses and discovery research. We have prioritised harmonisation of methods with other internationally significant cohorts (eg, utilisation of the Nightingale metabolomics and Illumina Global Screening Array genotyping platforms). Finally, the CheckPoint module was enjoyable for participants, and its impact on participant retention in future LSAC waves will be examined.

    The sample reflects the broader Australian population in many attributes, including state/territory of residence. A limitation (that can be partly addressed by using survey weights41) is that families were more likely to live in major cities and have a higher socioeconomic status than non-participants and Australians in general. The limitation that the majority of the parent sample are mothers reflects the design of the study and cannot be addressed using survey weights so should be considered and noted in all analyses of parents. Due to sample attrition, the final number of parent–child dyads was only around 1900, limiting power for rare exposures and outcomes; this is partly offset by LSAC’s common exposures, and CheckPoint’s focus on continuous outcome measures. Almost all measures were collected from only one of the child’s parents, although family studies will be possible for the 55% of families for whom we collected a DNA sample from both parents. A further potential limitation is that LSAC does not have prospective prenatal data on the children, although it does include prospective data from very early life (child age at wave 1 spanned 3–19 months) and permission to link to birth data.

    Implications and future research

    The wealth and depth of longitudinal LSAC data available gives important context to CheckPoint’s health and biomarker data. To commence a brand-new cohort incorporating these measures is exceptionally expensive and would have set back the availability of such data by decades, at a time when other prominent efforts to do so internationally have failed.43 44 Other internationally significant efforts, such as the US Environmental Influences On Child Health Outcomes (ECHO) Program,45 are now taking a similar approach to CheckPoint. For example, ECHO is enriching existing traditional child cohorts with additional cutting-edge biophysical modules and forward harmonisation. This will add great value to these cohorts and to knowledge that can be generated from their interrogation.

    In the study’s first decade, over 500 papers have been published using LSAC data. Child health is one of the most common topics of LSAC papers,42 and many of these health-related research questions could be extended on now that the CheckPoint data are available. For example, research papers on the parent-reported health comorbidities of overweight46 or short sleep duration47 published by our group could be extended to include comprehensive objective measures of segmental body composition, 24 hours’ time use including sleep and a range of health outcomes (eg, serum blood parameters, arterial structure and function). The greater precision brought by using these measures may reveal nuances in the associations not detectable using reported measures. Many new health-related questions are also now able to be examined, as LSAC’s broad range of early life exposures is reflected in peripubertal metabolic health and development of a wide range of body systems. In addition, the CheckPoint data set will be augmented with genetic data in late 2019, which will facilitate gene-environment analyses for the first time in this cohort.

    In summary, the efficient addition of objective health measures and biospecimens into the open-access LSAC repository greatly increases the utility of this widely used data set. Analysis of the CheckPoint data holds great promise in integrating cutting-edge measures of mid-childhood physiology with lifetime trajectories of mental and physical health, growth, behaviour and healthcare within a single population study. The data’s utility will continue to grow as ongoing waves of the main LSAC study accrue into adulthood, when CheckPoint health data will be able to be examined both as outcomes of early life exposures (LSAC waves 1–6) and predictors of later life health (LSAC wave 7 onwards).


    This paper uses unit record data from Growing Up in Australia, the Longitudinal Study of Australian Children. The study is conducted in partnership between the Department of Social Services (DSS), the Australian Institute of Family Studies (AIFS) and the Australian Bureau of Statistics (ABS).

    REDCap (Research Electronic Data Capture) electronic data capture tools were used in this study. More information about this software can be found at The authors

    thank the LSAC and CheckPoint study participants, staff and students for their contributions. In particular, the authors thank the CheckPoint team members Richard Liu, John Nguyen, Elissa Phillips, Anna Czajko and Josh Muller who made important contributions to the study.


    1. 1.
    2. 2.
    3. 3.
    4. 4.
    5. 5.
    6. 6.
    7. 7.
    8. 8.
    9. 9.
    10. 10.
    11. 11.
    12. 12.
    13. 13.
    14. 14.
    15. 15.
    16. 16.
    17. 17.
    18. 18.
    19. 19.
    20. 20.
    21. 21.
    22. 22.
    23. 23.
    24. 24.
    25. 25.
    26. 26.
    27. 27.
    28. 28.
    29. 29.
    30. 30.
    31. 31.
    32. 32.
    33. 33.
    34. 34.
    35. 35.
    36. 36.
    37. 37.
    38. 38.
    39. 39.
    40. 40.
    41. 41.
    42. 42.
    43. 43.
    44. 44.
    45. 45.
    46. 46.
    47. 47.
    48. 48.
    49. 49.
    50. 50.
    51. 51.
    52. 52.
    53. 53.
    54. 54.
    55. 55.
    56. 56.
    57. 57.
    58. 58.
    59. 59.
    60. 60.
    61. 61.
    62. 62.
    63. 63.
    64. 64.
    65. 65.
    66. 66.
    67. 67.
    68. 68.
    69. 69.
    70. 70.
    71. 71.
    72. 72.
    73. 73.
    74. 74.
    75. 75.
    76. 76.
    77. 77.
    78. 78.
    79. 79.
    80. 80.
    81. 81.
    82. 82.
    83. 83.
    84. 84.
    85. 85.
    86. 86.
    87. 87.
    88. 88.


    • Contributors SAC is the study project manager, and planned and conducted the analyses, and drafted the initial manuscript. PSA, LAB, DPB, JBC, MC, TD, BE, LG, JAK, FKM, TSO, SR, HR, RS, MS, PJS, LS, TYW and SRZ are study investigators involved in the conception and oversight of the Child Health CheckPoint, and provided expert advice and critical review of this manuscript. SD, SE, ANG, ACG, KLy and KLa are study staff or postdoctoral fellows and provided critical review of this manuscript. MW is the principal investigator of the Child Health CheckPoint, planned the analyses and provided critical review of this manuscript.

    • Funding This work was supported by the National Health and Medical Research Council (NHMRC) of Australia (Project Grants 1041352, 1109355), The Royal Children’s Hospital Foundation (2014-241), the Murdoch Children’s Research Institute (MCRI), The University of Melbourne, the National Heart Foundation of Australia (100660), Financial Markets Foundation for Children (2014-055, 2016-310) and the Victoria Deaf Education Institute. The urinary albumin and creatinine quantification was funded through NHMRC Program Grant 633003 Screening and Test Evaluation Program. The following authors were supported by the NHMRC: Senior Research Fellowships to MW (1046518) and DPB (1064629); Career Development Fellowship to FKM (1111160); Early Career Fellowship to KLy (1091124) and LG (1035100). The following authors were supported by the National Heart Foundation of Australia: Honorary Future Leader Fellowship to DPB (100369); Postdoctoral Fellowship to KLy (101239). MW is supported by Cure Kids New Zealand. The MCRI administered the research grants for the study and provided infrastructural support (IT and biospecimen management) to its staff and the study, but played no role in the conduct or analysis of the trial. DSS played a role in study design; however, no other funding bodies had a role in the study design and conduct; data collection, management, analysis and interpretation; preparation, review or approval of the manuscript; and decision to submit the manuscript for publication.

    • Disclaimer The findings and views reported in this paper are those of the authors and should not be attributed to DSS, AIFS or the ABS.

    • Competing interests All authors have completed the ICMJE uniform disclosure form at and declare financial support as described in the funding section. Personal fees were received by MW, PSA, MS and SRZ from the AustralianDepartment of Social Services. MW received grants from New Zealand Ministry of Business, Innovation & Employmentand A Better Start/Cure Kids New Zealand, and support from Sandoz to present ata symposium outside the submitted work.

    • Ethics approval The Royal Children’s Hospital Melbourne Human Research Ethics Committee (33225D) and the Australian Institute of Family Studies Ethics Committee (14-26).

    • Provenance and peer review Not commissioned; externally peer reviewed.

    • Data sharing statement The Longitudinal Study of Australian Children datasets and technical documents are available to researchers at no cost via a licence agreement. Data access requests are co-ordinated by the National Centre for Longitudinal Data. More information is available at

    • Collaborators Child Health CheckPoint Team: Peter S Azzopardi (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia; Maternal and Child Health Program, International Development Discipline, Burnet Institute, Melbourne, Victoria, Australia), Louise A Baur (The Discipline of Child and Adolescent Health, The University of Sydney, Westmead, New South Wales, Australia), David P Burgner (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia; Department of Paediatrics, Monash University, Clayton, Victoria, Australia), John B Carlin (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia), Michael Cheung (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia; Cardiology Department, The Royal Children’s Hospital, Parkville, Victoria, Australia), Terence Dwyer (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia; Nuffield Department of Obstetrics and Gynaecology, The George Institute for Global Health, University of Oxford, Oxford, UK; Institute for Medical Research, University of Tasmania, Hobart, Tasmania, Australia), Ben Edwards (Australian National University Centre for Social Research and Methods, Canberra, Australian Capital Territory, Australia), Susan Ellul (Murdoch Children’s Research Institute, Parkville, Victoria, Australia), Alanna N Gillespie (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia), Lisa Gold (School of Health and Social Development, Deakin University, Geelong, Victoria, Australia), Anneke C Grobler (Murdoch Children’s Research Institute, Parkville, Victoria, Australia), Jessica A Kerr (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia), Kate Lycett (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia; School of Psychology, Deakin University, Burwood, Victoria, Australia), Katherine Lange (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia), Fiona K Mensah (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia), Timothy S Olds (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Alliance for Research in Exercise, Nutrition and Activity, University of South Australia, Adelaide, South Australia, Australia), Sarath Ranganathan (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia; Respiratory and Sleep Medicine Department, The Royal Children’s Hospital, Parkville, Victoria, Australia), Helen Rogers (National Centre for Longitudinal Data, Department of Social Services, Canberra, Australian Capital Territory, Australia), Richard Saffery (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia), Michael Sawyer (School of Medicine, University of Adelaide, Adelaide, South Australia, Australia; Research and Evaluation Unit, Women’s and Children’s Health Network, Adelaide, South Australia, Australia), Peter J Simm (Murdoch Children’s Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, The University of Melbourne, Parkville, Victoria, Australia; Endocrinology and Diabetes Department, The Royal Children’s Hospital, Parkville, Victoria, Australia), Luke Stevens (Murdoch Children’s Research Institute, Parkville, Victoria, Australia), Tien Y Wong (Singapore Eye Research Institute, Singapore National Eye Centre, Singapore; Department of Ophthalmology, Yong Loo Lin School of Medicine, National University of Singapore and National University Health System, Singapore; Ophthalmology and Visual Sciences Academic Clinical Programme, Duke-NUS Medical School, National University of Singapore, Singapore), Stephen R Zubrick (Telethon Kids Institute, Subiaco, Western Australia, Australia; Graduate School of Education, University of Western Australia, Crawley, Western Australia, Australia).

    • Patient consent for publication Not required.