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  • Transmission of ESBL-producing Enterobacteriaceae and their mobile genetic elements—identification of sources by whole genome sequencing: study protocol for an observational study in Switzerland

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Infectious diseases
Protocol
Transmission of ESBL-producing Enterobacteriaceae and their mobile genetic elements—identification of sources by whole genome sequencing: study protocol for an observational study in Switzerland

Authors

  • Tanja Stadler Department of Biosystems Science and Engineering, Eidgenössische Technische Hochschule (ETH) Zürich, Basel, Switzerland Swiss Institute of Bioinformatics, Lausanne, Switzerland PubMed articlesGoogle scholar articles
  • Dominik Meinel Division of Clinical Microbiology, University Hospital Basel, Basel, Switzerland Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland PubMed articlesGoogle scholar articles
  • Lisandra Aguilar-Bultet Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, University Basel, Basel, Switzerland PubMed articlesGoogle scholar articles
  • Jana S Huisman Swiss Institute of Bioinformatics, Lausanne, Switzerland Department of Environmental Systems Science, Eidgenössische Technische Hochschule (ETH) Zürich, Zürich, Switzerland PubMed articlesGoogle scholar articles
  • Ruth Schindler Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, University Basel, Basel, Switzerland PubMed articlesGoogle scholar articles
  • Adrian Egli Division of Clinical Microbiology, University Hospital Basel, Basel, Switzerland Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland PubMed articlesGoogle scholar articles
  • Helena M B Seth-Smith Division of Clinical Microbiology, University Hospital Basel, Basel, Switzerland Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland PubMed articlesGoogle scholar articles
  • Lucas Eichenberger Biosafety Laboratory, State Laboratory Basel-City, Basel, Switzerland PubMed articlesGoogle scholar articles
  • Peter Brodmann Biosafety Laboratory, State Laboratory Basel-City, Basel, Switzerland PubMed articlesGoogle scholar articles
  • Philipp Hübner Biosafety Laboratory, State Laboratory Basel-City, Basel, Switzerland PubMed articlesGoogle scholar articles
  • Claudia Bagutti Biosafety Laboratory, State Laboratory Basel-City, Basel, Switzerland PubMed articlesGoogle scholar articles
  • Sarah Tschudin-Sutter Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, University Basel, Basel, Switzerland Department of Clinical Research, University Hospital Basel, Basel, Switzerland PubMed articlesGoogle scholar articles
  1. Correspondence to Dr Sarah Tschudin-Sutter; sarah.tschudin{at}usb.ch
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Citation

Stadler T, Meinel D, Aguilar-Bultet L, et al
Transmission of ESBL-producing Enterobacteriaceae and their mobile genetic elements—identification of sources by whole genome sequencing: study protocol for an observational study in Switzerland
BMJ Open 2018;8:e021823. doi: 10.1136/bmjopen-2018-021823

Publication history

  • Received January 19, 2018
  • Revised January 24, 2018
  • Accepted January 25, 2018
  • First published February 17, 2018.
Online issue publication 
February 17, 2018
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© Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted. This is an Open Access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/