Introduction In the UK, primary care is seen as the optimal context for delivering care to an ageing population with a growing number of long-term conditions. However, if it is to meet these demands effectively and efficiently, a more precise understanding of existing care processes is required to ensure their configuration is based on robust evidence. This need to understand and optimise organisational performance is not unique to healthcare, and in industries such as telecommunications or finance, a methodology known as ‘process mining’ has become an established and successful method to identify how an organisation can best deploy resources to meet the needs of its clients and customers. Here and for the first time in the UK, we will apply it to primary care settings to gain a greater understanding of how patients with two of the most common chronic conditions are managed.
Methods and analysis The study will be conducted in three phases; first, we will apply process mining algorithms to the data held on the clinical management system of four practices of varying characteristics in the West Midlands to determine how each interacts with patients with hypertension or type 2 diabetes. Second, we will use traditional process mapping exercises at each practice to manually produce maps of care processes for the selected condition. Third, with the aid of staff and patients at each practice, we will compare and contrast the process models produced by process mining with the process maps produced via manual techniques, review differences and similarities between them and the relative importance of each. The first pilot study will be on hypertension and the second for patients diagnosed with type 2 diabetes.
Ethics and dissemination Ethical approval has been provided by East Midlands–Leicester South Regional Ethics Committee (REC reference 18/EM/0284). Having refined the automated production of maps of care processes, we can explore pinch points and bottlenecks, process variants and unexpected behaviour, and make informed recommendations to improve the quality and efficiency of care. The results of this study will be submitted for publication in peer-reviewed journals.
- health informatics
- organisation of health services
- primary Care
This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/.
Statistics from Altmetric.com
Strengths and limitations of the study
This is the first time process mining has been applied to primary care in the UK and it offers a valuable, quantified approach for rapidly and reliably understanding the pathways of patients across large numbers of general practices with the potential to benefit both patient care and optimise service use.
Because healthcare data are notoriously unstructured and clinical processes complex, varied and long running, we will use an iterative approach to data preparation, mining and visualisation, combining machine learning and expert review.
The study is set in four practices of contrasting characteristics to help determine best practice in the use of process mining across the varied primary care setting.
Using orthodox process mapping exercises alongside the data-driven process mining approach means we can identify the differences and similarities of the maps produced by both techniques and refine the process mining algorithms as necessary.
In the UK, primary care is seen as the optimal context for delivering care to an ageing population with a growing number of long-term conditions.1 2 To do this, it must integrate teams of doctors, nurses and allied staff within high-quality processes.3 However, if care delivery is to be optimised, a more precise understanding of existing care processes and their consequences is required. In this way, existing systems can be amended and improved based on robust evidence.
In attempting to understand the interaction between health service and patient, numerous improvement methodologies have been employed, among them process mapping, a technique which involves gathering extensive qualitative data from a broad range of service providers and users to map individual processes. First employed in the manufacturing sector4 to understand the flow of materials and resource that converted raw material into an end product, creating similar process maps in healthcare settings is logistically challenging and labour intensive, requiring the simultaneous input of a range of clinical and non-clinical staff of varying seniority alongside an equally diverse mix of patients, all with experience of a particular service. Though a relatively effective means of describing a care process or pathway at a single location, such maps are limited by their subjective nature and a lack of quantitative evidence to describe the frequency that specific parts of the process are followed and by which groups of patients. A more precise understanding of these processes built on quantitative evidence and conducted comparatively quickly across a number of practices will enable senior managers and commissioners to make evidence-based decisions on scheduling activities and the allocation of staff and resources. This will help ensure patients enjoy timely and appropriate care and will also support more effective allocation of limited resources to help meet growing demand.
The need to understand and optimise organisational performance is not unique to healthcare. In many industries such as telecommunications, manufacturing and finance, a methodology known as ‘process mining’5–8 has become an established and successful automated method to quickly identify the processes used by an organisation for dealing with its clients and customers. It uses data routinely collated by an organisation’s IT systems, containing details on activities, timing and resource, to enable its business processes and organisational structures to be described both visually in the form of a flow chart and formally using mathematical representations.9–11 It also enables these discovered processes to be objectively compared against management supposition, external requirements for how the processes should operate, or different processes at similar organisations, to find out which configuration of staff and resource most effectively produces the required outcomes.12 13 By using relevant criteria, the advantages and disadvantages of various configurations can support recommendations for optimising future allocation of resources.14
This study is a first step towards employing process mining techniques to understand the complexity of primary care delivery in the UK. We will develop novel algorithms that will automatically produce process models to help senior practice staff and commissioning groups gain a deeper understanding of existing processes of delivering care. To prove that the concept of process mining in primary care works, we will compare the results of our automated process mining with those resulting from orthodox process mapping techniques by comparing the pathways produced by both methods for patients with hypertension or type 2 diabetes mellitus (T2DM), at four practices in the West Midlands.
Process mining in healthcare
There is extensive evidence of how in industry process mining has highlighted inefficiencies in existing organisational processes, for example where quieter sections of the pathway are over-resourced or pinch-points where demand exceeds capacity15–17; provided informed simulation of new scenarios, for instance how reallocating resources might affect run-time or process outcome18; or identified where tasks could be undertaken by an alternative member of staff such as those with a more appropriate level of seniority or skill set.19
More recently, there is a growing body of work applying process mining, also known as careflow mining20 in this context, to healthcare,21 although to date few of these studies have been based in the UK.22 Much of this existing research describes explorative case studies applying process mining in specific secondary care contexts.23 Previous work applying process mining techniques to emergency care,24 patients with cardiovascular disease,25 oncology,21 23 26 27 T2DM,28 29 stroke30 and sepsis31 have demonstrated that by collating information on the care processes of individual patients with a particular condition, distinctive care pathways can be determined.28 32 To do this, process mining has used records of the various sequences of events encountered in a care pathway such as consultations, laboratory tests, diagnoses and procedures,20 23 33–36 alongside related information such as the job title of the healthcare professionals involved at each step.37 Care processes discovered in this way have provided a well-founded evidence base for investigating patterns of behaviour, testing process improvement and ultimately their effect on patient outcomes.14 38 39 Previous work by Weber et al has employed a principled machine learning theoretical approach,40 and there is evidence that applying computational optimisation, search or clustering techniques can guide mining and generalisation, or simplify the resulting process models.41–43
Process mining in primary care has been studied less frequently than in secondary care, and there have been calls for further research in this setting.29 44 This context is characterised by a particularly heterogeneous environment consisting of multiple sites that can vary significantly in size, demographics and staff profile with related data potentially sourced from several different systems. Applications to UK contexts and data are particularly rare,21 23 and to the best of our knowledge, this study will be the first to apply process mining exclusively to primary care datasets in the UK. Our work will focus on processes for treatment of T2DM and hypertension (HT). Process mining has been applied to T2DM,11 28 45 but only a related technology (Association Rule Mining) has been applied to HT.46
Mining complex processes: the ‘spaghetti effect’
Routinely collected healthcare data can lack structure and include recording errors, manual data entry or variable levels of detail. The underlying processes are dynamic, complex, multidisciplinary, evolve as medical evidence develops and are frequently ad hoc.43 In the case of chronic illness, the patients’ interaction with the health service lasts for years. Taken together, these characteristics give rise to the problem of so-called ‘spaghetti’ models of un-interpretable complexity which contain so many nodes and interconnections that no useful structure or information can be inferred.20 45 47
To mitigate for the ‘spaghetti effect’, a number of techniques are available in each of four aspects of the process of producing a process model, that is, data preparation, data selection, mining and visualisation. At the data preparation stage, aggregation and clustering36 42 can be used to group low-level events into more abstracted ‘event types’.20 Repeated events may be grouped by time interval34 or pruned using some other threshold measure.20 Various methods have also been used to interpret events more accurately20 48 which can clarify interactions between them, or to group related activities.11 30 At the data selection stage, the issue of multiple process variants can be dealt with by clustering traces. To achieve this, a number of approaches have proved effective be they data-driven, that is, unsupervised machine learning,43 49 50 or knowledge-driven (supervised) allocation of traces to process variants.51–53
In the process mining phase, probabilistic methods have successfully used a representation which allows the mined model to be interpreted at different levels of aggregation,54 55 though it is also possible to mine a hierarchical model directly.56 Nguyen et al’s approach was to break the process into ‘stages’ assuming inherent high-level structure57; it is also possible to restrict mining to certain parts of the process, to address specific questions,23 or to use the extra information provided by clinical results or timing to guide the structure of the mined model.20 24 58 Ultimately, once models have been produced, visualisation can facilitate interactive control of the level of detail (eg, 10 11 59), inclusion of expert knowledge41 or visual effects such as heat maps.45
Mining the pathways of chronic disease can also lead to entangled process models where long-running processes have the potential to introduce complex cyclical models as similar sequences of events are repeated with variation as the disease progresses, and difficulty establishing the scope to be included in the mined process. As such cases become apparent, they can be investigated using process analytics methods such as identification of frequent sequences of activities20 23 29 and change or concept drift detection60–63 to intelligently extract the significant subvariants of the process.
Methods and analysis
Our study is the first time in the UK that process mining has been used in primary care settings to describe the care processes used by individual practices. We will use process mining techniques to automatically produce process models, describing the pathways used to manage patients with HT. We will also produce process maps at the same practices using orthodox methods and compare and contrast the two.
The overarching aim of our study is to determine whether process mining techniques can be applied to primary care in the UK with its challenges of scale and diversity and to describe best practice in doing so. This includes how they might complement and augment orthodox process mapping methodologies. We plan to meet this aim by fulfilling three key objectives, each corresponding to one of the three phases of the study.
First, we will develop methods and algorithms for creating models of the care processes for treating patients in individual general practitioner (GP) practices using the data routinely collated by each practice within their clinical management system. Second, we will use traditional process mapping exercises involving patients and staff to manually produce maps of HT care processes at the same practices. Third, we will compare and contrast process maps produced via the two different techniques, and compare with staff and patients at the practices where they were derived. We will then repeat the process for patients with T2DM. This will allow us to develop a framework to optimise the use of process mining to automatically describe complex care pathways in primary care. The study will begin in June 2018 and last for 12 months.
Phase I: care process discovery and presentation
In this project, we will use the comprehensive dataset held by the clinical management system (CMS) of each practice. This contains various coded information on patient contact with the service including consultations, diagnoses, prescriptions and laboratory tests. Our initial task is to develop process mining algorithms to determine processes used in a single practice in the management of HT using the standard process mining methodological approach43 63 which entails data selection and extraction, clustering (aggregating), mining and visualising. In doing so, we will identify the relevant variables needed to define the care of our target patients, identify the corresponding events and select the relevant records. The development of these algorithms will be iterative, and each iteration will be reviewed by our clinical expert (DS) and informatics lead (CH). Once finalised at one practice, these algorithms will then be used to automate the production of process models for the treatment of patients with HT at a further three practices. The graphical presentation of the care process will be based on business process model notation (BPMN).64 Further details on the application of process mining techniques to healthcare data are contained in the Research methodologies section.
Phase II: creating process maps
We will use proven process mapping techniques to produce process maps that describe the roles of various individuals, and the flow of materials and information required to support care for patients with the target condition. These maps will be developed following process mapping exercises conducted with groups of staff and patients at each practice.65
Phase III: comparison of process mining with process mapping
In the final phase, we will present the mined and mapped processes derived from each practice to focus groups consisting of patients and staff from that practice. These focus groups will allow us to explore any differences between the models and the maps, their relative importance and how these algorithms can be further refined.8 47 66 67 In the future, any comparison with intended pathways may be automated using process conformance methods8 12 to accurately measure compliance using metrics.
Patient and public involvement
The motivation for the study of using routinely recorded data to improve the efficiency and quality of healthcare processes came from the Clinical Commissioning Group (CCG) who were faced with the task of meeting increasing demand with limited resources yet not having a tool that could readily provide them with detailed information about service provision and use this would require. The concept was discussed with a patient representative with expertise in computer science and who worked as a practice manager so was able to comment on both technological aspects of the work and the potential benefits to both service providers and patients of being able to better understand existing care processes.
Here, we offer more detail on the three key methodologies we will be using: process mining, process mapping and focus groups.
Process mining uses so-called event logs routinely recorded by an organisation’s IT systems to learn a model of a business (or clinical) process which indicates what activities can take place, what order they occur in, which sequences of activities may take place simultaneously, or are mutually exclusive, or are repeated. The event log at a minimum records ‘events’ of a business ‘activity’ taking place, the time it occurred and what ‘case’ it belongs to. The concepts of process mining are summarised in table 1 alongside examples from the healthcare environment.
A ‘case’ collects all activities belonging to a specific instance of the process. In industry, this might be a given invoice or insurance claim. The sequence of recorded events making up a case is known as a process ‘trace’. In healthcare, a case will include all events relating to an individual patient and their contact with their practice, possibly restricted to a particular context of interest such as a medication review. Events may also record who the patient was in contact with (eg, practice nurse or GP) and the action undertaken (eg, prescription of medication, blood tests ordered), as described by the SNOMED codes.68 This dataset allows the production of process models or maps containing information on the patient, clinician, action and location.
Recently, a standard methodology for process mining has emerged which focuses on data preparation, selection and visualisation63 which we follow in this study. This means we will prepare then inspect log files, apply mining algorithms (to analyse the flow of activities, performance and organisational aspects), present and report results.
Where process mining is being used for the first time in a specific healthcare environment, the recommended approach is exploratory. Initially, we will use existing algorithms (eg, 9 10 69) as a starting point, explore optimal settings of their so-called ‘tuning parameters’ (eg, 9 10 40 59), then refine them as necessary to account for specific characteristics of our data and clinical processes. The setting of tuning parameters and development of the algorithms is based on iterative interaction with experts at each stage to validate results.22 31 This allows the identification of problems and limitations arising from (1) erroneous assumptions in interpreting the data; (2) errors in recording the data, indicating a need for further data cleaning; (3) complexity arising from changes to policy or organisational structures during the period covered by the data collected; or (4) process behaviour missed due to, for example, mining from too little data.7 70 In this way, we can tune the data selection and refine the process mining algorithms, leading to a new and clearer model of the care process, a step that may be repeated several times (see box 1). Once developed, process mining algorithms and tools can be applied to additional datasets held at similar sites to produce process maps in a matter of minutes (eg, 59). To mitigate any ‘spaghetti effect’, our focus will be on data pre-processing, data-driven event and trace clustering,43 71 72 and limited interactive control of the final visualisation, supported by principled machine learning approaches and expert review.
In presenting the mined processes to stakeholders, we will use BPMN, a user-friendly and widely accepted graphical language which has previously been used for modelling clinical processes.50 73–75 A highly simplified example of how a mined process might appear is shown in figure 1 relating to a hypothetical excerpt from the mined process for T2DM. This example illustrates how there may be evidence in a mined model of several variants of underlying process (outlined here by the dashed boxes), as well as unknown activities (represented by the filled boxes in the diagram) which indicate ‘noise’ in the data.
Steps in developing process mining algorithms
The development of algorithms to discover process models is iterative and involves the following four steps:
Enhance algorithms to enable use of timing and other data to refine the displayed process to optimise the correctness and usefulness of the first iteration maps. Develop clear visualisations based on Weber et al’s13 and Muller and Rogge-Solti’s work75 suitable for clinicians to understand which aspects of the process they focus on, for example, excluding or highlighting detail as required.
Review the process maps with experienced stakeholders for explanations of any anomalies, the required level of detail and the ease of use of the algorithms, process representations and visualisations.
Refine the data selection and process mining algorithms using knowledge gained in step 3 to produce correct and applicable process maps and trusted automated process mining algorithm. Steps 2 and 3 are then repeated as necessary.
In the UK and elsewhere, healthcare providers are increasingly relying on process improvement methodologies to streamline production, increase efficiency and minimise waste.76–78 These methodologies require that existing systems of service provision are thoroughly understood,79 process maps graphically represent the material and information flows that transform an unhealthy patient into a healthy one.80 The process is frequently depicted as a series of steps using specified shapes, symbols and colours to provide information on the type of action, the individuals involved and any associated values including metrics such as cycle or wait times. The process maps that result ultimately help identify which inputs and tasks have the greatest impact on the desired output or any areas of waste and delay and so can inform action plans that generate and implement solutions.81
Each process mapping exercise involves clinical and non-clinical staff of varying seniority alongside a representative range of patients. They typically take around 2 hours and involve the use of a large sheet of paper containing a horizontal timeline.65 Participants are then asked to note specific events within the care process (such as booking an appointment or a patient review) and apply these at relevant points across the timeline to create a graphic representation of the process.
Focus groups were chosen as the primary method of data collection as the interaction between participants can serve to challenge any over-idealised statements and produce realistic accounts of what people actually do.82 They also offer an opportunity for participants to reflect and test ideas rather than formulate ideas on the spot and the uninhibited discussion can remind participants and generate new thoughts.83
A focus group will be conducted at each practice and will consist of between six and eight participants84 reflecting a range of clinical and non-clinical staff and patients with first-hand experience of delivering and receiving care for the relevant condition. The groups will be digitally recorded and transcribed verbatim.
Data management and analysis
We will use data from the CMSs of which there are three predominant in the UK: EMIS-Web, SystmOne and InVision. The data they contain are routinely collected and collated and contain information on patient demography, clinical data, time and duration of consultation as well as information on practices and staff (see table 2). Events (prescriptions, referrals, appointments, etc) are recorded with a date, although in some cases more information may be specified. We expect this granularity to be adequate for process mining since we are dealing with patient interactions with a practice over a period of time. If multiple activities are found to occur on the same day, it may be possible to disambiguate these for example by referring to location or practitioner involved.
Data will be selected for a minimum of 24 months to ensure coverage of treatment life cycles (typically up to 12 months). This will include data for an estimated 4000 patients. While individual patients may interact with the services for far longer, using data collected over this time period, considering the number of patients listed at each practice, and the prevalence of the target conditions, we expect to include examples of all variants of treatment patterns.11 20 23 The pseudonymised data will be sourced via the CCG via the author CH. The data will contain events relating to many processes (eg, treatment of different morbidities for patients at a particular practice), so in order to produce a clear and meaningful process model, it is necessary to focus on events related to the underlying processes, in the first instance for treating patients with HT. We will therefore select patients diagnosed with this condition and identify the relevant data that capture their care, adapting pseudonymisation tools previously used by the CCG in providing similar data for use with BLISS project.85 In May 2018, the new general data protection regulation comes into effect repealing the previous Data Protection Directive 95/46/EC of 1995. Though built on similar principles, there are nevertheless additional protective measures for personal data used in health-based research and we will ensure that our data permissions reflect the new regulation.86 We will also account for the recommendations of the Review of data security, consent and opt-outs published by the National Data Guardian.87
We will interpret the variables to select (1) event IDs (actions), case IDs (patient IDs) and timestamps relating to HT; and (2) associated data including activity durations, locations, clinicians, test results and medication. Once we have identified the metadata needed, we will extract the relevant information from the CMS. To facilitate this data extraction, we will write code that selects the relevant patient records and fields relating to HT from the databases; this will be pseudonymised and stored on a secure server hosted by the University of Birmingham. Once we have constructed process models and maps for HT, we will repeat the process for patients with T2DM.
Settings and participants
Birmingham Solihull Clinical Commissioning Group (BSOL CCG)
The study will be conducted with BSOL CCG which has the fourth largest population of all CCGs in England with 95 member practices. They are a clinically led organisation, with an annual budget of £1 billion commissioning services for a population of around 710 000 offering fully integrated, sustainable health and social care and the potential for a large and diverse study.
Coauthor CH is digital lead at BSOL CCG and will assist in identifying and recruiting practices purposively selected to demonstrate maximum variance in terms of characteristics that include size of patient list, socioeconomic environment and number of GPs. There will be four practices involved in the study, and these will be visited in person by a member of the study team where the broader aims of the study and the role and implications of involvement of the individual practices will be discussed with practice staff. Patients will be recruited through clinical staff and via posters in practice waiting rooms to raise awareness of the work and invite their participation. Where possible, other means of communication such as text messages from the practice to patients will be used. Each patient participant will be provided with an information leaflet and consented by a member of the study team.
Process mapping groups will consist of at least one individual from each of the following job categories: General Practitioner, Practice Nurse, Health Care Assistant, Receptionist and Practice Manager. Patients with HT will be invited to join purposively selected to include different ethnic, age and gender groups. The moderator will seek the experiences of both groups of how the current management of HT proceeds.
For the final phase, focus groups will be convened consisting of between six and eight participants from each practice invited to attend from the previous process mapping exercises or recruited using the methods described above.
Process mining allows the automatic collation, linkage, analysis and use of routinely collected data. Its use will strengthen the alignment between data analysis and decision-making processes around effective resource use.
Because the CMS dataset contains information on the frequency with which different parts of the process are followed, and the resources involved at each stage, we can describe the weight of traffic across a process and highlight bottlenecks or other areas where resources can be usefully reallocated. We have some experience of using these datasets, the data they contain forms the basis of pseudonymised datasets used in other examples of primary care research88 and we have also successfully used the data held on the CMS in exploring prescribing behaviours in multimorbid patients in primary care.89
The aim of process mining is not merely to gain insights into processes but to use such intelligent analysis to streamline them90 and to improve patient outcomes.14 38 39 In the future, it is expected that these models can be used to simulate new scenarios where activities are scheduled differently or resources have been reallocated. This will mean senior practice managers and commissioners can explore the effects of reallocation of resources before introducing any changes in reality.
The study will use pseudonymised and aggregated patient data. The encryption key for this data will be held securely at each practice so that anonymisation is preserved and patient-identifiable data are not stored on University of Birmingham servers. For the focus groups, full informed consent will be obtained by a member of the research team with a Good Clinical Practice certificate, Research Passport, letter of access and any other associated approvals prior to starting. After the focus group has been conducted, participants will have up to 2 weeks to withdraw their data prior to analysis. All data for this study will be held securely, either in a locked cabinet in a secure access building, or on University computers behind a firewall and with appropriate encryption, on backed up servers.
Ethics and dissemination
Our work will be of interest to all those interested in making evidence-based decisions on resource allocation including GP partners, practice managers, commissioning groups and government organisations. As our algorithms will be the first to systematically analyse healthcare processes in primary care in the UK, our findings are expected to be of significant relevance to the service delivery, informatics and process improvement academic communities. A favourable ethical opinion was provided by East Midlands–Leicester South Research Ethics Committee (REC reference 18/EM/0284).
We will publish peer-reviewed articles in high-impact healthcare and informatics journals as well as generic trade journals such as Practice Management and The Pulse to disseminate our findings to health service managers in primary care. This process will be bolstered by an online presence using a bespoke website and social networking pages such as Facebook and Twitter to promote and disseminate our work to the wider public.
Our findings will be presented at national and international healthcare conferences focused on the quality and safety of healthcare and process mining and at bioinformatics conferences. The impact of our work is enhanced by the close partnership with BSOL CCG and their commitment to explore the use of process mining to inform strategic guidance and recommendations for the optimal allocation of resources across the CCG, and within individual practices appropriate to the needs and preferences of their patients.
Contributors lL, PW and CH were responsible for the conception of the work and the design of the study. IL led the drafting of the article with input from PW, CH and DS. ML, AT, CH, DS and RB all provided critical revisions. The final version was drafted by lL and PW and approved by AT, RB, ML, CH and DS.
Funding The authors have not declared a specific grant for this research from any funding agency in the public, commercial or not-for-profit sectors.
Competing interests None declared.
Patient consent Not required.
Provenance and peer review Not commissioned; externally peer reviewed.
If you wish to reuse any or all of this article please use the link below which will take you to the Copyright Clearance Center’s RightsLink service. You will be able to get a quick price and instant permission to reuse the content in many different ways.