Gene | SNP | Chr:bp position (hg18) | p Value | Genome-wide association study | Direction of change in expression in multiple sclerosis |
ANXA1 | rs13292677 | 9:74870791 | 0.0001 | Baranzini et al2 | Increased9 11 |
rs1961830 | 9:74872500 | 0.0001 | |||
rs7863238 | 9:74886984 | 0.0001 | |||
rs1342022 | 9:74895327 | 0.0001 | |||
rs2310333 | 9:74897200 | 0.0001 | |||
CD40 | rs6131010 | 20:44157712 | 8.5E–07 | ANZgene5 | Increased (FIN11) |
rs6074022 | 20:44173603 | 1.3E–07 | |||
rs1569723 | 20:44175471 | 2.9E–07 | |||
rs3746821 | 20:44188518 | 9.7E–05 | IMSGC1 | ||
rs2425764 | 20:44233852 | 2.5E–05 | |||
CDK4 | rs10876994 | 12:56351004 | 5.4E–11 | ANZgene5 | Decreased11 15 16 |
rs12368653 | 12:56419523 | 2.7E–10 | |||
rs703842 | 12:56449006 | 1.0E–07 | |||
CXCR4 | rs4954555 | 2:136509584 | 0.0001 | Baranzini et al2 | Increased (FIN11) |
rs7574456 | 2:136606529 | 2.5E–05 | De Jager et al3 | ||
rs1519529 | 2:136690727 | 4.1E–05 | |||
C7orf54 | rs1193335 | 7:127404040 | 3.0E–05 | De Jager et al3 | Increased (FIN9) |
GNG2 | rs4468527 | 14:51394881 | 4.1E–05 | De Jager et al3 | Decreased9 16 |
IL7R | rs931555 | 5:35839334 | 2.7E–06 | De Jager et al3 | Increased12 14 |
rs6897932 | 5:35910332 | 1.7E–06 | |||
ITPR1 | rs711663 | 3:4437774 | 1.6E–05 | De Jager et al3 | Increased (FIN11) |
NPEPPS | rs9901869 | 17:42930205 | 2.9E–06 | De Jager et al3 | Increased11 12 |
rs4239162 | 17:43110809 | 6.9E–06 | |||
rs11079784 | 17:43057279 | 3.6E–05 | Baranzini et al2 | ||
PAK2 | rs6583176 | 3:198009975 | 3.9E–05 | De Jager et al3 | Decreased9 15 16 |
TGFBR2 | rs12490899 | 3:30649258 | 5.7E–05 | De Jager et al3 | Decreased9 15 16 |
TNFAIP3 | rs892999 | 6:138180398 | 3.1E–06 | De Jager et al3 | Increased (FIN11 15 16) |
TNFRSF1A | rs1800693 | 12:6310270 | 1.6E–11 | De Jager et al3 | Decreased (FIN15 16) |
rs4149576 | 12:6319376 | 1.0E–08 | |||
TRIB2 | rs7607490 | 2:12768571 | 1.0E–05 | Baranzini et al2 | Increased11 12 |
ZMIZ1 | rs1250540 | 10:80706013 | 1.6E–06 | De Jager et al3 | Decreased9 11 |
The best p value is shown if several p values were provided.
FIN, previously unpublished Finnish microarray screen described in detail here.